Donnelly Centre for Cellular and Biomolecular Research

Gary Bader on International Team Receiving $4-million (U.S.) Award from Chan Zuckerberg Initiative

Jul 16, 2019
Author: 
Ann Perry

liver map teamSonya MacParland (left) and Dr. Ian McGilvray (centre), scientists at UHN's Transplant Program, Gary Bader, a professor at U of T’s Donnelly Centre, and Mei Zhen (not pictured), a senior investigator at the Lunenfeld-Tanenbaum Research Institute at Sinai Health System, are part of an international team working to build a more complete picture of the human liver (Photo by UHN).

A group of Toronto researchers that published the first single-cell map of the human liver last fall is part of an international team that has been awarded $4 million (U.S.) by the Chan Zuckerberg Initiative to advance understanding of the organ across diverse life stages and genetic backgrounds.

Gary Bader, a professor and computational biologist at the Donnelly Centre for Cellular & Biomolecular Research, Sonya MacParland, a scientist at the Toronto General Hospital Research Institute (TGHRI) at University Health Network (UHN) specializing in liver immunology, and Ian McGilvray, a senior scientist at TGHRI and a transplant surgeon at UHN, are among 19 investigators and collaborators from around the world who are sharing the award. Part of the Human Cell Atlas, an international effort to map all cells in the human body, the collaboration is bringing together liver mapping efforts from around the world to build a more complete picture of the human liver.

“We have been working on building a global team of researchers who are all interested in mapping the human liver in different ways,” said Bader, who is a member of the organizing committee of the Human Cell Atlas. “This grant from the Chan Zuckerberg Initiative really speeds up the development of the human liver map and allows us to move in novel directions by combining diverse research projects and data into one map.”

The international collaboration is a “direct extension” of the liver mapping work he and his Toronto collaborators have already done with support from Medicine by Design, Bader added.

"We have a specific plan to collect a range of samples to cover a lot of diversity, allowing us to understand the variability in the human liver across the population" - Professor Gary Bader

Their project — titled A Reference Cell Atlas of Human Liver Diversity Over a Lifespan — is one of 38 that are sharing $68 million (U.S.) in funding through the Chan Zuckerberg Initiative’s Seed Networks for a Human Cell Atlas program. Co-founded by Facebook chief executive officer Mark Zuckerberg and his spouse, paediatrician Priscilla Chan, the Chan Zuckerberg Initiative seeks to harness technology to solve some of the world’s greatest problems and is actively supporting the Human Cell Atlas.

The three-year award is significant because it supports international collaborations, which often are ineligible to receive money from country-specific research funders, Bader said. The liver project includes computational biologists, clinicians, engineers and life scientists from Canada, Singapore, Germany, Belgium, the U.K., the U.S. and Israel. The team will meet in Toronto to kick off the project in late July.

The international nature of the research team means it will have access to samples that better represent the full diversity of human livers, including age, sex and genetics.

“One of the goals of the Human Cell Atlas is to capture human diversity,” Bader said. “We have a specific plan to collect a range of samples to cover a lot of diversity, allowing us to understand the variability in the human liver across the population.”

For the Toronto-led part of the project, Bader, MacParland and McGilvray have joined forces with a new collaborator, Mei Zhen, a senior investigator at the Lunenfeld-Tanenbaum Research Institute at Sinai Health System. Zhen is an expert in volumetric electron microscopy, a technology that captures high-resolution, three-dimensional images by assembling individual images of extremely thin slices of tissue samples. Zhen has been developing this technology for studying neural systems in C. elegans, tiny worms that are part of the nematode family.

This is believed to be the first time the technology will be used to image the liver as part of a tissue map project. Bader said the organ is a good candidate because it is made up of tiny, repeating, hexagonal-shaped structures called lobules.

“Because of the biology of the liver, it is an interesting opportunity to understand the whole organ by studying its individual modules,” Bader said.

The Toronto team plans to link these images with genomics data by applying computational methods and deep learning to analyze the vast amounts of data the project will generate, ultimately creating a unified map.

“Medicine by Design helped catalyze this team, and we are delighted it is taking a leadership role in international efforts to create a next-generation map of the human liver,” said Michael Sefton, a Donnelly Centre investigator and executive director of Medicine by Design. Sefton is also a University Professor at the Institute of Biomaterials & Biomedical Engineering (IBBME) and the Michael E. Charles Professor in the Department of Chemical Engineering & Applied Chemistry. “This investment by the Chan Zuckerberg Initiative is an affirmation of the excellence and innovation of their research, and supports the collaborative, interdisciplinary approach that is at the core of Medicine by Design.”

All data, tools and protocols generated from the Chan Zuckerberg Seed Networks for a Human Cell Atlas projects will be freely available to the research community.

Follow us on Twitter to keep up with Donnelly Centre news.